During the last three months I have been working as a trainee at the Molecular Systems Biology journal. My contract is know finished I thought I would post about my short experience in publishing for anyone possibly interested is testing this career path. To avoid any misuse, what I am writing is solely my opinion and does not reflect any position of the journal I worked for.My main motivation to try this out was my interest in science publishing and the scientific process in general.
We are at a particular interesting stage of transition from publishing on paper to publishing on the web and most publishers are trying to find ways to best cope with the change.
So what goes on in a journal ? Different journals probably have different work flows but at least in MSB, the most obvious analogy is a filtering pipeline. Submitted and commissioned articles work as the input, they are assigned to an editor who reads the article and any related work (yes, they do read them carefully :), and either reject by editorial decision or assign potential referees. The referee reports are evaluated and a final decision is reached (reject, major revision, minor revision). This description probably fits what any author that as gone trough the process of publishing a paper would expect.
What I learned to appreciate was the amount of work that goes into the editorial job. It takes a lot to keep up-to-date with such a breath of different subject areas. This is also one of the great aspects of the job, to have time to read and keep up with many different research fields. The commissioned work is also an interesting part of of the editorial role. The editors have to come up with subjects and authors that would make for good reviews/tutorials. This is almost like dreaming up research projects.
What are some of the downsides ? For me, the single biggest drawback is not being able to work on research projects. It is almost inevitable that reading about different areas and new ideas to start thinking about possible research questions but you cannot react to them. Another issue that I never thought about is that journals can also get scooped for the commissioned manuscripts. There is a limited number of authors and upcoming interesting topics so it is quite easy to see a topic that was under discussion published somewhere else. Another aspect of the job that might be sometimes uncomfortable is the communication between authors/referees and editors. In a system were the referees work for free and authors have a very strong pressure to get published, editors are left in the middle trying to put it all together in a way that is hopefully fair for everyone and results in a collection of interesting reading material for a particular community.
So in summary I thought this was a very useful experience. I think that it would be to everyones benefit that this type of trainee periods were more a standard part of a scientific education. It would give everyone more to relate with when we have to go trough the publishing process either as author, referee or editor.
This also brings me up to an announcement. MSB have made their blog (The Seven Stones) public today. The blog was started during my stay at MSB and some of the previous posts (by Thomas Lemberger) can already give an impression of the main topics that will be covered.
I think blogging can be a great conduit for journal editors to express their personal views, to share with others what they feel is interesting research (and not just from their own journals), to post about conferences they attend and spark or participate in discussions that are of interest to the community they serve. Until recently the editorial pages were the only way to do this but maybe blogs can take up this role and make it slightly less formal and more participatory.
I would even risk a potential controversial idea. What if journal editors could use their blogs to post about interesting research questions ?


Comments
I would even risk a
I think the correct Web 2.0/Science 2.0 terminology would be "disruptive idea" :)
Thank you for posting your experience at MSB on nodalpoint, I think that ultimately you'll be recognized as a pioneer in exploring the possibilities of web based publishing systems for science (aka weblogs). I'm interested to see if you agree, but my intuition tells me that we are currently witnessing a tipping point with respect to uptake of blogs/wikis/social networking etc. by working scientists as tools to improve the process of doing scientific research. 2007 is the year, trust me...
tipping point 2
Thanks for the flattering words ;) but I would credit Timo Hannay and Chris Surridge for driving the change from the publishers side. Their initiatives (Nature Blogs, Nature Network, Connotea, PLoS ONE, etc) are the ones changing people's mind about web technologies. The blogs at ScienceBlogs and seed have also been very important.
About 2007, well I hope so, but it is really hard to predict. What we need now are examples of successful projects developed in the open. I am not ignoring pioneer projects like BioPerl but it would be great to have also discovery science. If open projects are really efficient then this would tip further the scales and drive more people to work this way.
About the Nodalpoint meeting and getting funds. Here in Europe, Marie Curie fellowships sometimes fund these events but it would need to be something bigger than just one conference. We could try to apply for a grant to develop Nodalpoint as an open science platform for bioinformatics. We could have a look at the grant application from OpenWetWare and see if would be feasible to do something similar.
Tipping points
2007 is the year, trust me...
Didn't we say that in 2001 ;)
No, I agree - things are moving quickly and in an agreeable direction. This can only accelerate as more young scientists come through (and more old scientists retire or die). In fact, I think it will soon be time to organise the inaugural "Nodalpoint Science 2.0 conference" - now, where to get some funding?
Personal views
The suggestion of having research proposals in a blog is tempting. Could be delicate, given that editors have access to confidential information. Let's think about this one ;-)
As for the role of blogging for editors, it is true that editors can (or should) express their personal views in a blog. On the other hand, they inevitably represent the journal at the same time: again, the path to follow can be narrow...
In any case, happy that you liked your stay. It was a great pleasure having you around!
Thomas
Added
I've added The Seven Stones to http://planet.nature.com/
Do any of the other blogs listed there post the kind of thing you're talking about?
Nature blogs
I mostly read Nascent, Nautilus and Peer-to-Peer because they are great and closer to my interests (web tech and publishing) but I have seen that some of the Nature blogs have been covering conferences and starting interesting discussions. The discussion about social software in Methagora and the post on Nature Medicine 2.0 are good examples of this. One of the first blogs that Nature started had a bad habit of mostly posting links to the journals' papers but the new blogs are doing more interesting things now.
Nice idea
What if journal editors could use their blogs to post about interesting research questions
Well that would be great! They could tell us what they'd like to see in the journal. Or it would provide a forum to discuss research findings from published articles, spurring people on to do the next great experiment. I alluded to this in a recent blog post about open discussion of hypotheses.
Thanks for this interesting post.