Burn semantic Web, Burn!

Taking down A.I. town?

Danger! Religious Wars!The Semantic Web is (quote) "a new form of Web content that is meaningful to computers". It will "unleash a revolution of new possibilities" using a magical "new" artificially intelligent technology called ontology. So says a much-cited article in Scientific American published back in May 2001. Most people who have read this article, fall into two camps: "believers" and "non-believers". Let me tell you a short story about a religious war between these two groups...

An Old War Story: Chapter 1

This is a work of fiction, though as they say in Hollywood it is "based on a true story". Characters names are real.

A crusade of semantic web believers, is started by three people called Jim Hendler, Ora Lassila and Tim Berners-Lee. At the heart of their faith is a holy scripture and a suite of sacred technology called the semantic web stack. If people use this technology, the crusaders believe, the Web would be a better place. Search engines like Google, for example, would be even smarter than they already are, because they would intelligently "know what you mean", when you type your keywords. All this new magic comes from using good old fashioned logic, metadata and reasoning. Better Search Engines is one of the mantras of the semantic web troops as they pour onto the battlefield towards the promised land. Viva la Webolution! Charge!

A counter-attack is launched by the non-believers of this vision of the future. They rally behind a man called Clay Shirky who roars "the semantic web is doomed" at the top of his voice. Many others echo Shirky's sentiment, including Peter Norvig, Rob McCool, Cory Doctorow and Tim O'Reilly. General Shirky makes powerful allies in battle, and he has a two-pronged attack. "Ontology is over-rated" he jeers. Led by Shirky, the non-believers capture the sacred technology, add their own firewood and put the torch to it in a very public place. The flames leap into the sky, visible for miles around.

"Burn semantic web, burn!" the non-believers cry as they gleefully dance around the fire.

The battle rages, the believers will not take this heresy lying down. They regroup and surge forward again. Death to the blasphemers! With the help of some biologists, they seek revenge using the Gene Ontology as deadly ammunition. The non-believers are confused by this tactic, they don't know what genes are and neither do the biologists. Unfortunately, the biologists unwittingly find themselves in the middle of an epic battle they didn't start. There are ugly skirmishes involving logic and graph theory. Dormant and hideous A.I. monsters are resurrected from their caves, where they spent the A.I. winter. These gruesome monsters make the Balrog beast from Lord of the Rings look like a childrens cuddly toy.

From the relative safety of their command centres, the leaders orchestrating the war look on. Many foot soldiers and PhD students have been slayed on the field of battle, tragic young victims of the holy war. Understandably the crusaders are unhappy. Jim Hendler isn't pleased as he surveys the carnage and devasation. Ora Lassila is also disappointed.

"We never said that, you completely minsunderstood. You are all burning the wrong thing, using fuel we never gave you. You lied, you cheated, you faked, you changed the stakes!"

There is a lull in battle. But confusion reigns, especially among the innocent civilians and bewildered biologists.

(End of chapter 1)

Epilogue

As of the winter of 2007, the semantic web fire is still burning. While I warm myself next to it, using all the juicy metadata as material for my PhD, it is still too early to predict just how useful the technology is going to be. It doesn't really matter if you're a "believer", a "non-believer" or completely agnostic about the semantic web. The religious war beween the two sides tells you more about human behaviour, than it does about the utility of the technology. Optimists profit from making bold claims to get noticed on the battlefield. Critics are more cynical, furthering their own careers by countering the optimists claims. Other people interpret the interpretations of the cynics second-hand. Thanks to cumulative error, or the Chinese whispers effect, everyone gets really upset. The original optimists vision has been changed in ways they didn't expect.

It's a very natural and human story amidst all the "artificial" machine intelligence.

Ora, Jim and Tim have done quite well out of the fighting. Google Scholar reckons their original article has been cited nearly 5000 times. That is a lot of attention, in scientific circles, a veritable blockbuster hit. At the time of writing, not even Albert Einstein can match that, and his ideas are much more important than the semantic web probably ever will be. Many good scientists with important ideas can only dream of publishing a paper that is as heavily cited as that infamous Scientific American article. So which do you think would most scientists prefer:

  • Being internationally known and talked about, but misunderstood by large groups of people?
  • Being relatively unknown, ignored but well understood by a small and obscure group of people?

Neither is ideal but I think in most cases, there is only one thing in the world worse than being talked about, and that is not being talked about.

We have reached the end of chapter 1 of this little story. Wouldn't it be nice if Chapter 2 was less bloody? Perhaps the two sides could focus more on facts and evidence, rather than the beliefs, opinions, marketing, hype and "visions" that have dominated the battle so far. As the winter solstice approaches and the new year beckons, can we give peace, diplomacy and above all SCIENCE a chance?

The Moral of the Story (so far)

The moral of this old war story is simple. Religions of various kinds have been known to make people commit horrendous and completely unreasonable war crimes. Nobody is innocent. So if you don't like a fight, steer well clear of religious wars.

Acknowledgements

  1. The "burn" idea comes from Leftfield with John Lydon (1995) Open Up "Burn Hollywood, Burn! Taking down Tinseltown"
  2. Thanks to Carole for the idea of using fiction to illustrate science see Carole Goble and Chris Wroe (2005) The Montagues and the Capulets: In fair Genomics, where we lay our scene... Comparative and Functional Genomics 5(8):623-632 DOI:10.1002/cfg.442 seeAlso Shakespearean Genomics: a plague on both your houses)

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RDFs

I came across this old thread, and thought I'd point out that these days SNPedia does have the sacred RDFs thanks to the semantic-mediawiki.org extension. Today the most obvious benefit is that the SNPedia:FAQ is able to maintain some live counts about the site. The RDFs aren't yet connected to any others, but one baby step at a time it looks a bit more semantic. It seems only a matter of time until it can leverage SPARQL and perhaps the Halo browser.


warning believer

A solution is a web with both, where some websites are more semantic than others. The semantic web lacks commercial success, because it has no place to put advertising. Best Buy has no motivation to make a semantic web site. But NCBI definitely does.

My own solution has been to ensure that data I produce is semantic friendly. The data is written onto wiki pages. The whole site becomes a semantic book about one topic. humans can edit it, but programs can crawl and query it. Humans and bots work together, on mix of wikipedia and relational database.

A public example is at
http://www.snpedia.com/index.php?title=SNPedia
which tracks human genetic variations and the tests for them

and these slides explaining a semantic wiki based LIMS
http://bioteam.net/wikilims.html

These are baby steps towards a full semantic web, but I've found them extremely powerful.

The algorithmic simplicity of ontologies solves many important problems, but fails miserably for much of the real world. Tag systems adapt better to the real world. Both can be modeled semantically, and should be.

Mike Cariaso * Bioinformatics Software * http://www.cariaso.com


Dude, Where's Your Ontology?

Hello Mike, had a look at SNPedia and the semantic wiki. Couldn't find the (sacred?) ontology (RDF / OWL / Whatever) anywhere, is it publicly available? Maybe I didn't look hard enough...

Anne Cregan at the University of New South Wales, Australia has kindly drawn my attention to an article in the December 2007 issue of Scientfic American "The Semantic Web In Action" which claims corporate applications of the semantic web are well under way, and consumer uses are emerging... haven't read it yet, but looks like it might be interesting.

Its written by Lee Feigenbaum (IBM), Ivan Herman (W3C), Tonya Hongsermeier , Eric Neumann and Susie Stephens .


shmontology

big upfront design is suicide.

DBpedia has written rdfs for the existing wikipedia templates. I should have no problem creating rdfs for the snpedia ones. For the moment I'm keeping flexibility by writing all my queries in python. In time I'll carve the stable 80% into an rdf, and be able to use sparql.

From this web page you can play with wikipedia semantic queries.
http://wikipedia.aksw.org/index.php?qid=13

Mike Cariaso * Bioinformatics Software * http://www.cariaso.com


Religious War or Religious Cult?

Theres lots of good stuff in the Open Lab 2007 winning entries but I particularly liked this: Academia is a [religious] cult. Sometimes the semantic web seems more like a religious cult than a scientific endeavour :)


Cladistics

That's already a cult. A couple of more years it will be a completely new religion.


Call for (more) Semantic Web Testimonials

In addition to rather old and tired looking semantic web testimonials, Lee Feigenbaum is asking for more, see forwarded message below.

So if you've a SPARQL in your eye, these people would like to hear from you.

======

Dear W3C Colleagues,

I'm writing to you as a representative of an organization that is a W3C member whom I believe to be involved in research and/or development surrounding Semantic Web technologies. (My apologies if I'm mistaken.) In particular, I'm writing in reference to the SPARQL query language and protocol, which has recently been published as a W3C Proposed Recommendation, and is scheduled to be published as a W3C Recommendation in January.

In anticipation of sharing this achievement with the public, we are looking to gather a substantive collection of testimonials in support of SPARQL. I'm including below a note from Janet Daly of the W3C Communications Team which includes more details and guidelines about testimonials.

This is a great opportunity to help with outreach for a key semantic web technology to the rest of the world. At the same time, testimonials are an excellent vehicle for advertising your organization's support of W3C Semantic Web technologies as well as any products that your company might have that implement or use SPARQL.

The deadline for testimonials is Jan 8, 2008.

For more detailed information on the testimonial process, including examples, guidelines, and much more, please see Janet Daly's note below.

thanks,
Lee Feigenbaum
On behalf of the RDF Data Access Working Group

PS If you think you might provide a testimonial, I'd appreciate a heads-up note, just to help me track our status. Thanks!

~~ more information from Janet:

Dear DAWG participants,

Please accept my late congratulations for the set of SPARQL Proposed Recommendations.

In anticipation of a successful completion of the review period, W3C is preparing for announcements around SPARQL Recommendations, or standard. As part of the celebration, we will be issuing a press release and would like to include a testimonial sheet from W3C Member implementors and others.

We will have a draft press release available in the next week for your review. The document will be available to those with Member access. It will not be made public until the actual announcement date. Our current plans are to issue an announcement in early January; we're making efforts to get this draft to you well in advance of the date in deference to the scheduling difficulties of the end of the calendar year.

The guidelines for testimonials are at the bottom of this email. Deadlines for sending those documents to w3t-pr@w3.org is currently 7 January 2008.

Again congratulations on work well done. We look forward to having your participation in the Recommendation announcement.

Kind regards,

Janet Daly, W3C Communications Team

Guidelines for Testimonials

Supporting Testimonial Statements along W3C Press Releases

The Communications Team invites the Membership to participate in a press announcement by submitting supporting testimonial statements. Testimonials are not translated by W3C, but submission of testimonials in multiple languages is encouraged.

Please note that the press release itself is expected to be multilingual (at least available in English, French and Japanese).

Testimonial Guidelines

A testimonial must

  • contain a statement of support for the W3C and the technology we are promoting in this release;
  • be grammatically correct;
  • be attributed to an individual in the submitter's organization (name, title, org)

A testimonial should

  • contain an explanation of why the news is important to the Web or to specific communities, extolling the virtues and features not before enjoyed;
  • include a commitment for support of the spec in existing or future products and/or services

A testimonial may

  • include product announcements which support the technology now or plans to support later;
  • be in a language other than English.

A testimonial must not

  • contain criticisms of the technology that may undermine the success of the specification;
  • contain links to sites outside of W3C;
  • criticize other products or services;
  • exceed 100 words.

(note to self, this doesn't sound very "scientific"?)

Upon request by journalists, we would also pass on contact information of companies who have contributed testimonials.

Questions and Follow-up

If your marketing team has any questions, please have them phone Janet Daly (voice: +1 617.253.5884) or send mail to w3t-pr@w3.org.