MAFFT

Under MAFFT's hood

Hello

I am trying to learn what exactly MAFFT does to align sequences, but i am currently having a hard time to understand it.
I have read its papers and references.
Anyone knows of some kind of tutorial or review for it?

I am researching the FFT-NS-i and E-INS-i algorithms.

Currently, i am trying to understand what are the 6-tuples parameters. I guess the 6-tuples are the weight, volume and charge, compared in pairs of sequences. Is that right?

Thanks in advance

EDIT:
Just in case someone is interested:


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